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Dostupne baze za korištenje:

nr
nt
swissprot
kog
pfam
NR
NT
Swissprot

Varijabla za baze BLASTDB

Code Block

language	bash
theme	Midnight
title	ncbi-nr db example

#!/bin/bash

#PBS -N ncbi-ex
#PBS -l ncpus=16

cd $PBS_O_WORKDIR

module load scientific/NCBI-BLAST+/2.14.1

ncbi-blast+.sh blastp -query cow.1.protein.faa -db $BLASTDB/nr/nr -num_threads=$NCPUS -mt_mode=1

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