Dostupne verzije i pripadajući moduli:
| Verzija | Modul |
|---|
| 5.7.0 | bioinfo/TransDecoder/5.7.0 |
Korištenje:
Primjer je skinut sa: https://github.com/TransDecoder/TransDecoder/tree/master/sample_data/simple_transcriptome_target
| Code Block |
|---|
| language | bash |
|---|
| title | LongOrfs.sge |
|---|
|
#!/bin/sh
#$ -N makedborfs
#$ -pe *mpisingle 2
#$ -cwd
module load bioinfo/TransDecoder/5.7.0
TransDecoder.LongOrfs -t Trinity.fasta |
...
| Code Block |
|---|
| language | bash |
|---|
| title | Predict.sge |
|---|
|
#!/bin/sh
#$ -N makedbpredict
#$ -pe *mpisingle 2
#$ -cwd
module load bioinfo/TransDecoder/5.7.0
TransDecoder.Predict -t Trinity.fasta |
...