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- Mouse 2bit: https://hgdownload.cse.ucsc.edu/goldenpath/mm10/bigZips/mm10.2bit
Detaljnije objašnjenje same komande i drugih argumenata : https://github.com/hillerlab/TOGA
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#!/bin/sh #$ -N toga_example #$ -pe p28-mpisingle 28 #$ -R y #$ -cwd module load bioinfo/TOGA/1.1.2 toga.py test_input/hg38.mm10.chr11.chain test_input/hg38.genCode27.chr11.bed hg38.2bit mm10.2bit --pn test -i supply/hg38.wgEncodeGencodeCompV34.isoforms.txt --chn 100 --cjn 10 --u12 supply/hg38.U12sites.tsv --ms --nc nextflow_config |
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