alignment_choice: diamond
choose_parallel: parallel
column: SOURCE_ID
consensus_cutoff: 0.75
create_tax_table: 1
cutoff: tax-cutoffs.yaml
database: mmetsp
download_reference: 0
individual_or_summary: individual
jobname: test
mets_or_mags: mags
names_to_reads: 0
nucleotide_extension: .fna
organisms:
- Phaeocystis;antarctica
original_tax_table: taxonomy-table.txt
original_taxonomy: taxonomy-table.txt
output: out
protein_extension: .faa
protein_map: protein-map.json
ref_fasta: reference-pep-trunc.pep.faa
reference: reference_DIR
force_rerun: 1
salmon_dir: 0
samples: samples_MAGs
scratch: scratch
subroutine: all
tax_table: tax-table.txt
taxonomy_organisms:
- species
transdecoder_orfsize: 100
use_salmon_counts: 0 |