How to use:
Available versions of bcftools and modules:
| Version | Module |
|---|---|
| 1.15.1 | bioinfo/bcftools |
Example script how to run a bcftools job on the cluster:
bcftools.sge
#!/bin/bash #$ -N bcftools #$ -cwd #$ -q a16.q module load bioinfo/bcftools/1.15.1 bcftools roh -G30 --AF-dflt 0.4 file.vcf
If using --threads or -t, instead of -q a16.q use -pe *mpisingle 2
Starting a job
qsub bcftools.sge