Verzija | Modul |
---|---|
5.7.0 | bioinfo/TransDecoder/5.7.0 |
Primjer je skinut sa: https://github.com/TransDecoder/TransDecoder/tree/master/sample_data/simple_transcriptome_target
#!/bin/sh #$ -N orfs #$ -pe *mpisingle 2 #$ -cwd module load bioinfo/TransDecoder/5.7.0 TransDecoder.LongOrfs -t Trinity.fasta |
#!/bin/sh #$ -N predict #$ -pe *mpisingle 2 #$ -cwd module load bioinfo/TransDecoder/5.7.0 TransDecoder.Predict -t Trinity.fasta |
TransDecoder nema mogućnost korištenja više dretvi, stoga je dovoljno zauzeti 2. |
source /apps/mambaforge/mamba/bin/activate mamba create -p /apps/virtenv/TransDecoder/5.7.0 -c bioconda transdecoder |