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Verzija	Modul
2.1.9	bioinfo/eggNOG-mapper/2.1.9

Korištenje

#!/bin/bash
#$ -N eggNOG-test
#$ -cwd
#$ -pe *mpisingle 16

module load bioinfo/eggNOG-mapper/2.1.9

emapper.py -i proteins.fasta -o test --cpu $NSLOTS

Dostupne baze:

taxa
diamond
novel families diamond
Pfam
MMseqs2
HMMER

Baze su pod varijablom EGGNOG_DATA_DIR

Instalacija

mamba create -p /apps/virtenv/eggNOG-mapper/2.1.9/ python=3.8
mamba activate /apps/virtenv/eggNOG-mapper/2.1.9
mamba install -c bioconda eggnog-mapper
mkdir /apps/virtenv/eggNOG-mapper/2.1.9/db
export EGGNOG_DATA_DIR=/apps/virtenv/eggNOG-mapper/2.1.9/db
download_eggnog_data.py -F -P -M -H