Dostupne verzije
| Verzija | Modul | Supek | Padobran |
|---|---|---|---|
| 0.39 | scientific/trimmomatic/0.39 |  |  |
Primjeri:
- Primjer je rađen po uzoru na: https://github.com/usadellab/Trimmomatic
- Varijabla $ADPS sadrži sljedeće adaptere:
NexteraPE-PE.fa
TruSeq2-PE.fa
TruSeq2-SE.fa
TruSeq3-PE-2.fa
TruSeq3-PE.fa
TruSeq3-SE.fa
trimmomatic-test.pbs
#PBS -N trimmomatic-example
#PBS -q cpu
#PBS -l select=1:ncpus=8
module load scientific/trimmomatic/0.39
cd ${PBS_O_WORKDIR}
trimmomatic.sh trimmomatic PE -threads $NCPUS -phred33 reads.left.fq.gz reads.right.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:$ADPS/TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36